NMDC Leadership Team
Emiley Eloe-Fadrosh (LBNL)
Emiley joined the Joint Genome Institute at Berkeley Lab in 2014 to pursue microbial ecology and metagenomics research. She is Head of the Metagenome Program and leads the Environmental Genomics Group.
Nigel Mouncey (LBNL)
In 2017, Nigel became the Director of the Joint Genome Institute at Berkeley Lab after nearly 19 years leading Industry research and development teams. He also leads the Secondary Metabolites Group.
Douglas Mans (PNNL)
Douglas oversees the entire EMSL user program and serves as the primary interface with BER, PNNL and the user community for science, management, and operations of EMSL. He is responsible for establishing a scientific vision to attract outstanding staff scientists and users to EMSL facilities and programs, promoting innovative research, and fostering the creation of robust scientific teams and communities.
Patrick Chain (LANL)
Patrick is a Los Alamos National Laboratory Research Fellow, and is the head of Bioscience Division's Bioinformatics and Genome Analytics group, and a senior scientist within the Biosecurity and Public Health Group.
Kjiersten Fagnan (LBNL)
Kjiersten is Chief Informatics Officer and Data Science and Informatics Department Head at the Joint Genome Institute, Berkeley Lab. She has over 10 years of experience in scientific computing and experimental data analysis.
Lee Ann McCue (PNNL)
With over 20 years in comparative genomics and high-throughput data analyses, Lee Ann is a senior computational scientist at the Pacific Northwest National Laboratory.
NMDC Team Members
Bin Hu (LANL)
Bin Hu is a staff scientist at Los Alamos National Laboratory. His current research interests are on computational inference of phenotype using genotype information, antibody dynamics, bioinformatics software algorithm, and software development.
Shane Canon (LBNL)
Shane is a Senior Engineer at KBase and Berkeley Lab’s Supercomputing Facility. For over 20 years, he has helped scientists conduct breakthrough science using some of the fastest computers in the world.
Bill Duncan (LBNL)
Bill is a software developer at Berkeley Lab, with a MS in Computer Science from Clemson University and a PhD in Philosophy, with a focus in formal ontology, from the University at Buffalo. Armed with over 15 years of experience and his skills as an ontologist, he works with healthcare systems to integrate healthcare data from multiple sources.
David Hays (LBNL)
David Hays is a software developer at the Joint Genome Institute, and is responsible for building the systems for managing sequencing projects and for collecting metadata associated with researcher provided samples.
Stanton Martin (ORNL)
Stanton leads data management for Oak Ridge National Laboratory’s Biosciences Division. He has over 15 years of experience using new technologies to manage data acquisition, curation, and sourcing.
Samuel Purvine (PNNL)
Sam Purvine has worked in bottom-up mass spectrometric proteomics since 1998, with deep knowledge of all aspects of the art. He serves as final data product liaison for EMSL Users who wish to use the mass spec proteomics capability.
Marisa Rudolph (LBNL)
Marisa has a B.S. in Environmental Science and Political Science from Santa Clara University. Before joining the NMDC, she studied how private companies, public entities, and collaborative institutions work together to further a shared goal as a Fulbright Research Fellow. In her current role, she supports strategic partnerships to further NMDC's mission to enable widespread FAIR microbiome data generation.
Setareh Sarrafan (LBNL)
Setareh joined Berkeley Lab in February 2021. She previously worked at both UC Berkeley and UC San Francisco as a Scrum Master, Product Owner, Project Manager and Informatics Implementation Manager.
Jagadish Sundaramurthi (LBNL)
Jagadish joined the NMDC at Berkeley Lab in September 2019. He works on microbiome and genomic standards. Before joining the NMDC, he worked on HIV and TB Immunology and Bioinformatics.
Pajau Vangay (LBNL)
Pajau is the Scientific Community Engagement Manager for the NMDC. She joins the Berkeley Lab with combined experiences in computational biology, community outreach, and public policy. Most recently, she led the Immigrant Microbiome Project.
Elisha Wood-Charlson (LBNL)
Elisha is KBase’s User Engagement Lead at Berkeley Lab. With a decade of experience in microbial ecology and scientific community engagement, she leads several projects aimed at making microbiome data science more efficient.
Tatiparthi Reddy (LBNL)
Dr. TBK Reddy leads the Genomic Standards Group responsible for the Genomes OnLine Database (GOLD) at the Joint Genome Institute. Dr. Reddy joined the JGI in 2011 and provides scientific, operational oversight and serves as the primary point of contact on metadata standards, and manages the daily activities of the GOLD group.
Montana Smith (PNNL)
Montana is an earth scientist at PNNL in the Environmental Molecular Sciences Division (EMSD). She works primarily on soil systems studying microbial ecology and the effects of environmental perturbations on carbon and nitrogen cycling.
Mark Miller (LBNL)
Mark has held laboratory and computational roles at workplaces including the University of Pennsylvania’s dental and medical schools and Merck Vaccine Basic Research. Mark holds an MS in bioinformatics from the University of the Sciences in Philadelphia and identifies as an ontologist.
Kayd Miller (LBNL)
Kayd joined the NMDC team in July 2019 through as the Administrative Support for the project. Kayd holds a bachelor of arts degree in Politics, Economics, Policy, and Law with a concentration in Public Policy from Mills College.
Anubhav is a software engineer with more than 6 years of industry work experience developing artificially intelligent(AI) systems in natural language processing and computer vision domain. He received an M.S. in computer science from Iowa State University. Anubhav's experience spans diverse organizations and industries, most notably, bioinformatics, finance, and software industry
Lisa Bramer (PNNL)
Lisa Bramer is a senior staff scientist at Pacific Northwest National Laboratory (PNNL) in the Applied Statistics and Computational Modeling group. She has a Ph.D. in statistics from Iowa State University. Since joining PNNL in 2013, her research has primarily focused on the evaluation of mass spectrometry (MS)-based omics data, including proteomics, metabolomics and lipidomics.
Yuri Corilo (PNNL)
Yuri is a computational scientist in the Environmental Molecular Sciences Laboratory (EMSL) at PNNL. He joined PNNL in 2019 after six years as a Research Scientist and four years serving as the director of computational science for the Ion Cyclotron Resonance (ICR) program at the National High Magnetic Field Laboratory (NHMFL). He received his Ph.D. in Organic Chemistry from the University of Campinas and has over ten years of experience in the development of scientific software applied to complex mixtures characterization by high-resolution mass spectrometry.
Marcel Huntemann (LBNL)
Marcel is a Computer Systems Engineer at the DOE Joint Genome Institute and has over 15 years of experience in developing tools to help analyze microbial datasets. He joined the JGI in 2007 and is currently the head of the IMG Pipelines group. He holds a M.S. degree in Computer Science from the University of Bremen, Germany and worked as a Scientific Programmer at the Max Planck Institute for Marine Microbiology prior to coming to the JGI.
Po-E “Paul” Li (LANL)
Po-E (Paul) Li is a senior level bioinformatician with formal education in computer science and MS in bioinformatics, and 10+ years of professional experience in designing and implementing pipelines and algorithms for analyzing genomic and sequencing data. As a research technologist at Los Alamos National Laboratory, he has had a focus on assay design, signature identification, microbiome analysis, taxonomic profiling and transforming results to visualization.
Chien-Chi Lo (LANL)
Chien-Chi Lo is a research technologist at Los Alamos National Laboratory (LANL). He has more than 10 years of work experience on developing bioinformatics workflows, analytical software, and genomic data analysis. He holds two M.S. degrees: in Bioinformatics from the National Yang-Ming University, Taipei, Taiwan; and in Computer Science from the University of New Mexico.
Paul Piehowski (PNNL)
Paul is a staff scientist and Team Lead for proteomics in EMSL. He joined PNNL 10 years ago as a post-doctoral researcher and has over 15 years experience applying mass spectrometry to biological research, primarily in the fields of proteomics and metabolomics.
Rachel Richardson (PNNL)
Rachel Richardson joined the Applied Statistics and Computational Modeling group at Pacific Northwest National Laboratory (PNNL) at the start of 2020 as a Post-Masters Research Associate after completing graduating with a M.S. in bioinformatics and genomics from the University of Oregon. Her work focuses on the collaborative development of R packages and graphical user interfaces, as well as assisting in the analysis of quantitated proteomic, lipidomic, and metabolomic mass spectrometry data.
Migun Shakya (LANL)
Migun Shakya is a staff scientist at Los Alamos National Laboratory (LANL). He received his Ph.D in Genome Science from the University of Tennessee at Knoxville in 2013. His current research interests include terrestrial viruses and their effect on ecosystems, large scale comparative metagenomics using k-mers, and development of workflows to analyze whole genome and transcriptomic datasets.
Kelly Stratton (PNNL)
Kelly Stratton is a senior staff scientist at Pacific Northwest National Laboratory (PNNL) in the Applied Statistics and Computational Modeling group. She has a M.S. in biostatistics from the University of Washington. Since joining PNNL in 2014, her work has primarily focused on the statistical analysis of quantitated, mass-spectrometry-derived ‘omics data, including proteomics, lipidomics, and metabolomics.
Mark Borkum (PNNL)
Mark is a computer scientist in the Buildings and Connected Systems group in the Energy and Environment Directorate at Pacific Northwest National Laboratory (PNNL). He joined the Environmental Molecular Sciences Laboratory (EMSL) at PNNL in 2015 as a postdoctoral researcher to pursue his research interests in metabolomics and fluxomics. His current research focuses on enabling data representation and exchange in the buildings and energy community.
Donny Winston (Polyneme, LLC)
Donny studied electrical engineering and computer science (EECS) at the University of California at Berkeley and completed his master’s and PhD degrees in the EECS department at MIT. Donny was the principal web developer (full-stack) and data/systems engineer for the Materials Project at LBNL. He now runs a software and data consulting practice, with expertise in helping researchers do data-intensive science together.
Mark Flynn (LANL)
Mark is a software developer at Los Alamos National Laboratory (LANL). He received his Ph.D. in Neurobiology from the University of Delaware in 2001 and M.S. in Computer science from the University of New Mexico in 2011. He has worked in both industry and academia, using HPC and cloud systems, in a variety of roles including as a developer, architect and as a devops engineer.
Dave Millard (PNNL)
Dave is a project manager and software systems engineer at Pacific Northwest National Laboratory (PNNL) in the Data Engineering & Architectures group. Dave has a M.S. in Computer Science from the University of Denver. Since joining PNNL in 1986, he has been the technical lead for multiple software engineering efforts that focused on the acquisition and application of real-world data as it traverses the ‘data pipeline’.
Elais Player Jackson (LANL)
Elais Player is an application developer at Los Alamos National Laboratory (LANL). He has more than ten years of work experience in both academia and industry writing software for use science, finance, and supply-chain management. His current interests include reproducible software deployment for high-performance computing and smart visualization of genomics data and analysis.
Yan Xu (LANL)
Yan Xu is a software developer at Los Alamos National Laboratory. She has 18 years of experience in software development, database design, system testing and end user support. Yan develops customized software and web-based applications for use in bioscience related projects.
Danielle Svehla Christianson (LBNL)
Danielle is a Computer Science Engineer in the Data Science and Technology Department, Computational Research Division at Lawrence Berkeley National Laboratory. She joined Berkeley Lab in 2016 to pursue her interests in earth and data science. Her current work focuses on developing data management tools like data processing workflows, data standards, and usable software interfaces to improve earth science research quality and efficiency as well as encourage a culture of data interoperability and sharing.
Karen Davenport (LANL)
Karen is a genomics/metagenomics analyst and bioinformatician at Los Alamos National Laboratory and has worked on the development of the EDGE Bioinformatics platform. As a lead developer and co-host for twelve workshops on next-generation sequencing and bioinformatics provided by LANL, she has been instrumental in teaching hundreds of scientists on many aspects of sequencing and bioinformatics, as well as training several of the LANL staff to teach.
Meghan Drake (ORNL)
Meghan is a Technical Project Manager at Oak Ridge National Laboratory in the Computational Biology and Bioinformatics group in the Biosciences Division. After obtaining her Master of Science in Comparative and Experimental Medicine at the University of Tennessee, Knoxville, Meghan joined ORNL in 2005 focusing on micro- and molecular biology of anaerobic bacteria. Beginning in 2012, Meghan switched her focus to project management and obtained her Project Management Professional (PMP) certification in 2015.
Julia Kelliher (LANL)
Julia Kelliher is a post-Masters student in the Biosecurity and Public Health Group at the Los Alamos National Laboratory (LANL). She received a Bachelor’s degree in Neuroscience from Skidmore College and an M.S. in Biotechnology from Johns Hopkins University. Since joining LANL in 2017, she has worked on a variety of projects focused on the gut microbiome, the soil microbiome and bacterial-fungal interactions, as well as infectious disease and biothreat detection and treatment.
Mary Lipton (PNNL)
Mary Lipton is a senior staff scientist at Pacific Northwest National Laboratory (PNNL) and serves as the Mass Spectrometry Capability Lead for the Environmental Molecular Sciences Laboratory. She has a Ph.D. in Biochemistry and over 20 years of experience in bioanalytical chemistry. Her research has specifically focused on the application of advanced mass spectrometry techniques to the characterization of biological and environmental systems.
Sofya Lebedeva (LBNL)
Sofya is an undergraduate at UC Berkeley pursuing a degrees in Molecular and Cellular Biology. For the NMDC she focuses on community engagement through social media and user experience.
Michael Babinski (LANL)
Michal is a bioinformatics graduate student intern at LANL. He is involved in workflow testing and checking to make sure reproducibility is achieved within and between environments. On the NMDC team he ensures consistency is accounted for in workflow processing and output, an essential part of setting the reproducibility standards for NMDC. He is a Master's student in Bioinformatics and Genomics at the University of Oregon.
Brandon Davis (Kitware, Inc. )
Brandon is a software engineer at Kitware with a focus on front-end web development. He works primarily on the NMDC data portal client.
Faiza Ahmed (Kitware, Inc. )
Faiza is a UI/UX designer at Kitware. She has been providing complex user interface design solutions for several years. She joined the NMDC team in Feb-2020 where she works on data portal UI design.
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