Publications
Team Publications
- Kelliher, JM, Rudolph M, Vangay P, Abbas A, Borton MA, Davenport ER, Davenport KW, Erazo NG, Herman C, Karstens L, Kocurek D, Lutz HL, Myers KS, Ockert I, Rodriguez FE, Santistevan C, Saunders JK, Smith ML, Vogtmann E, Windsor A, Wood-Charlson EM, Woodley L, Eloe-Fadrosh EA. Cohort-based learning for microbiome research community standards. Nature Microbiology. 2023 April 17. doi:10.1038/s41564-023-01361-7.
- Hu B, Canon S, Eloe-Fadrosh EA, Anubhav, Babinski M, Corilo Y, Davenport K, Duncan WD, Fagnan K, Flynn M, Foster B, Hays D, Huntemann Ml, Jackson EKP, Kelliher J, Li PE, Lo CC, Mans D, McCue LA, Mouncey N, Mungall CJ, Piehowski PD, Purvine SO, Smith M, Varghese NJ, Winston D, Xu Y, Chain PSG. Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale. Front Bioinform. 2022 January 17. 1:826370. doi: 10.3389/fbinf.2021.826370.
- Eloe-Fadrosh EA, Ahmed F, Anubhav, Babinski M, Baumes J, Borkum M, Bramer L, Canon S, Christianson DS, Corilo YE, Davenport KW, Davis B, Drake M, Duncan WD, Flynn MC, Hays D, Hu B, Huntemann M, Kelliher J, Lebedeva S, Li PE, Lipton M, Lo CC, Martin S, Millard D, Miller K, Miller MA, Piehowski P, Jackson EP, Purvine S, Reddy TBK, Richardson R, Rudolph M, Sarrafan S, Shakya M, Smith M, Stratton K, Sundaramurthi JC, Vangay P, Winston D, Wood-Charlson EM, Xu Y, Chain PSG, McCue LA, Mans D, Mungall CJ, Mouncey NJ, Fagnan K. The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource. Nucleic Acids Res. 2022 January 7;60(D1):D828–D836. doi: 10.1093/nar/gkab990.
- Vangay P, Burgin J, Johnston A, Beck KL, Berrios DC, Blumberg K, Canon S, Chain P, Chandonia JM, Christianson D, Costes SV, Damerow J, Duncan WD, Dundore-Arias JP, Fagnan K, Galazka JM, Gibbons SM, Hays D, Hervey J, Hu B, Hurwitz BL, Jaiswal P, Joachimiak MP, Kinkel L, Ladau J, Martin SL, McCue LA, Miller K, Mouncey N, Mungall C, Pafilis E, Reddy TBK, Richardson L, Roux S, Schriml LM, Shaffer JP, Sundaramurthi JC, Thompson LR, Timme RE, Zheng J, Wood-Charlson EM, Eloe-Fadrosh EA. Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities. mSystems. 2021 Feb 23;6(1). doi: 10.1128/mSystems.01194-20. PubMed PMID: 33622857.
- Wood-Charlson EM, Anubhav, Auberry D, Blanco H, Borkum MI, Corilo YE, Davenport KW, Deshpande S, Devarakonda R, Drake M, Duncan WD, Flynn MC, Hays D, Hu B, Huntemann M, Li PE, Lipton M, Lo CC, Millard D, Miller K, Piehowski PD, Purvine S, Reddy TBK, Shakya M, Sundaramurthi JC, Vangay P, Wei Y, Wilson BE, Canon S, Chain PSG, Fagnan K, Martin S, McCue LA, Mungall CJ, Mouncey NJ, Maxon ME, Eloe-Fadrosh EA. The National Microbiome Data Collaborative: enabling microbiome science. Nat Rev Microbiol. 2020 Jun;18(6):313-314. doi: 10.1038/s41579-020-0377-0. PubMed PMID: 32350400.
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